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Activity 2.2.6.3

Objective 2.2:    Develop an Integrated Breeding WorkBench
Activity 6:           Develop an Integrated Breeding Decision Support System Application
Subactivity 3:    Simulation

Year 2010           2011                       2012                       2013                       2014          
Month J A S O N D J F M A M J J A S O N D J F M A M J J A S O N D J F M A M J J A S O N D J F M A M J
Month No. 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60
Tool 8.8                       [1],[8] [9]                     [8],[9]             [2],[4]           [5],[8]         [9] [6],[7]          
Tool 8.9                       [1],[2] [3],[4]                     [5]             [6]           [7]           [8]          
Tool 8.10                       [1] [2]                     [3],[4] [5]           [6]           [1]                      


Tool 8.8         Stategic Tools (Application modules: QuLine, QuHybrid and QuMARS; User Interface: QuGeneUI; QuGene Engine)
Milestone 1  Implementation of genomic selection functionality (application modules)
Milestone 2  Inclusion of algorthims from MARS Tool (8.7) for cross selection (application modules)
Milestone 3  Enhanced breeding strategy editor (user interface)
Milestone 4  Viewing and tracking of pedigrees and selection histories (application modules)
Milestone 5  Mutation added (QuGene Engine, application modules and user interface)
Milestone 6  Enhanced output management - tracking of trait, gene, and genotype, and storage of output in binary format to improve processing speeds (application modules and user interface)
Milestone 7  Improved modeling of epistasis (application modules)
Milestone 8  Updated documentation
Milestone 9  Collaborate on the implementation of QuGene on iPlant infrastructure for strategic simulation

Tool 8.9         Tactical Tools (Ingetrated Breeding Target Browser and Breeding Program Simulator)
Milestone 1  Formal description of features and functionalities
Milestone 2  Annotated flow diagrams of the tool
Milestone 3  Mockups for the graphical user interface (GUI) of the tool
Milestone 4  Partially functional a-version of the tool for testing
Milestone 5  Functional β-version of the tool for futher testing (Version 1.0)
Milestone 6  Version 2.0 of the tool
Milestone 7  Release Candidate1 version ready for production
Milestone 8  Release Candidate2 version of ready for production

Tool 8.10       Service Delivery
Milestone 1  Provision of simulated data for validation of analytical and decision support tools
Milestone 2  Strategic simulation of cow peas use case - definition of GE system and breeding methods
Milestone 3  Strategic simulation of cow peas use case - run simulations to optimise program design
Milestone 4  Cross simulation in wheat use case - definition of GE system for know genes
Milestone 5  Cross simulation in wheat use case - full definition simulation in GUI
Milestone 6  Other strategic simulations are requested (e.g. maize and sorghum use cases)

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